212 commits

Author	SHA1	Message	Date
Edgar P. Burkhart	6319cf89bf	Switched to spooled tmpfile	2022-03-15 10:35:11 +01:00
Edgar P. Burkhart	91c17ce00f	Fixed typo (pres, velk)	2022-03-15 10:31:18 +01:00
Edgar P. Burkhart	6219c425b7	Fixed typo (pres, velk)	2022-03-15 10:31:18 +01:00
Edgar P. Burkhart	038937b46b	Add other useful variables to sws_npz	2022-03-15 10:29:55 +01:00
Edgar P. Burkhart	88541bf5fc	Add other useful variables to sws_npz	2022-03-15 10:29:55 +01:00
Edgar P. Burkhart	d2c02fda52	Fixed initialization issue	2022-03-15 10:26:25 +01:00
Edgar P. Burkhart	3e9aadbea6	Fixed initialization issue	2022-03-15 10:26:25 +01:00
Edgar P. Burkhart	405c0ca514	Revert to single npz archive	2022-03-15 10:25:13 +01:00
Edgar P. Burkhart	5edc4d7bc8	Revert to single npz archive	2022-03-15 10:25:13 +01:00
Edgar P. Burkhart	2d1c5683f2	Processing update: fix empty file issue	2022-03-15 10:21:09 +01:00
Edgar P. Burkhart	009e500d7a	Processing update: fix empty file issue	2022-03-15 10:21:09 +01:00
Edgar P. Burkhart	bb9dfe8603	Processing update to reduce memory usage	2022-03-15 10:11:21 +01:00
Edgar P. Burkhart	68e8d16f7c	Processing update to reduce memory usage	2022-03-15 10:11:21 +01:00
Edgar P. Burkhart	644bec9112	LFS	2022-03-11 13:40:51 +01:00
Edgar P. Burkhart	d69a39f25b	Animate swash output	2022-03-10 10:56:19 +01:00
Edgar P. Burkhart	daad8b32d4	Set tide level and fixed x in sws inputs	2022-03-10 10:56:09 +01:00
Edgar P. Burkhart	bf4e9e6958	Fixed optional comparison	2022-03-10 10:55:34 +01:00
Edgar P. Burkhart	fdfbd081d9	Input file without breakwater with absorption	2022-03-09 15:26:07 +01:00
Edgar P. Burkhart	f7e64c0a2d	Processing reformat	2022-03-09 15:23:51 +01:00
Edgar P. Burkhart	f4ccdb009a	Post-processing: comparing with and without breakwater	2022-03-09 15:23:06 +01:00
Edgar P. Burkhart	6fd766f515	Add swash input with sponge layer	2022-03-07 13:24:24 +01:00
Edgar P. Burkhart	c4c751721b	Add swash model nobreakwater	2022-03-07 12:42:11 +01:00
Edgar P. Burkhart	ff7d5380a8	Add bathy without breakwater	2022-03-07 12:39:00 +01:00
Edgar P. Burkhart	371acdf9d1	Changed styling	2022-03-07 12:30:50 +01:00
Edgar P. Burkhart	fa2e30deec	Switched fft to psd	2022-03-07 12:25:38 +01:00
Edgar P. Burkhart	d945770453	Added spectrum to reflection plot	2022-03-07 10:52:22 +01:00
Edgar P. Burkhart	3e2de12a92	Swash buoy spectrum input	2022-03-07 10:32:36 +01:00
Edgar P. Burkhart	78a3f7fb54	Fixed shift of bathy	2022-03-04 12:00:35 +01:00
Edgar P. Burkhart	7686aeffe5	Fill water in x plot	2022-03-04 11:32:46 +01:00
Edgar P. Burkhart	75f932da98	Removed input data from post	2022-03-04 11:30:23 +01:00
Edgar P. Burkhart	32596da600	Added markers to reflection plot	2022-03-04 11:23:27 +01:00
Edgar P. Burkhart	255532ced2	Added reflection plot period limits	2022-03-04 11:18:13 +01:00
Edgar P. Burkhart	5140714c71	Removed 0-division	2022-03-04 11:13:07 +01:00
Edgar P. Burkhart	339413501c	Switched to time spectrum	2022-03-04 11:11:29 +01:00
Edgar P. Burkhart	113dfc05cc	Added mkdir parents for post out	2022-03-04 11:08:55 +01:00
Edgar P. Burkhart	c2f867a7dd	Changed post out folder structure	2022-03-04 11:07:43 +01:00
Edgar P. Burkhart	46845010f3	Fixed numpy abs	2022-03-04 11:03:06 +01:00
Edgar P. Burkhart	0bdd73da19	Add real x support to post	2022-03-04 11:01:01 +01:00
Edgar P. Burkhart	1be7a5285b	Switched dep to watl	2022-03-04 10:52:28 +01:00
Edgar P. Burkhart	071fde81b5	Fixed missing return in const case	2022-03-04 10:47:23 +01:00
Edgar P. Burkhart	785880e503	Fixed typo	2022-03-04 10:45:09 +01:00
Edgar P. Burkhart	0f9841bff6	Added support for const	2022-03-04 10:43:45 +01:00
Edgar P. Burkhart	c517ddaf68	Fixed data as kwarg	2022-03-04 10:38:46 +01:00
Edgar P. Burkhart	3c0a4f3e83	Fixed missing numpy import	2022-03-04 10:33:26 +01:00
Edgar P. Burkhart	586ceed09d	Removed some variables from sws_npz to prevent memory filling	2022-03-04 10:31:32 +01:00
Edgar P. Burkhart	3a14639017	Added progress info to sws_npz	2022-03-04 10:25:05 +01:00
Edgar P. Burkhart	24567866cb	Sorted imports with isort	2022-03-04 10:23:24 +01:00
Edgar P. Burkhart	ddc6526882	Fixed read_swash class	2022-03-04 10:22:38 +01:00
Edgar P. Burkhart	868e34777e	Changed swash reading procedure to read time and space data from output	2022-03-04 10:21:02 +01:00
Edgar P. Burkhart	2a2793f92e	Fixed t plot in post	2022-03-03 16:12:19 +01:00
Edgar P. Burkhart	b73f81c4ea	Fixed t in sws_npz	2022-03-03 16:08:50 +01:00
Edgar P. Burkhart	bec1cd2a89	Fixed post	2022-03-03 16:03:44 +01:00
Edgar P. Burkhart	1a789ced40	Use npz in post	2022-03-03 16:02:52 +01:00
Edgar P. Burkhart	a51c727349	Removed -x permissions on sws input	2022-03-03 15:57:29 +01:00
Edgar P. Burkhart	8899ad8b36	Added x,t to npz	2022-03-03 15:55:48 +01:00
Edgar P. Burkhart	a6c7343fbd	Optimized npz	2022-03-03 15:54:18 +01:00
Edgar P. Burkhart	805b4219c5	Changed sws_npz log name	2022-03-03 15:52:31 +01:00
Edgar P. Burkhart	051800ba64	Black reformat post-process	2022-03-03 15:51:51 +01:00
Edgar P. Burkhart	bb4981ebf7	mkdir in sws_npz	2022-03-03 15:51:40 +01:00
Edgar P. Burkhart	948cb178de	Fixed np.savez_compressed	2022-03-03 15:50:32 +01:00
Edgar P. Burkhart	ca5f3a4c6c	Fixed typo in sws_npz	2022-03-03 15:49:06 +01:00
Edgar P. Burkhart	c60251b541	Fixed typo in sws_npz	2022-03-03 15:48:30 +01:00
Edgar P. Burkhart	134b05e17a	Fixed typo in sws_npz	2022-03-03 15:48:01 +01:00
Edgar P. Burkhart	5b0f05e9ec	Fixed missing import in sws_npz	2022-03-03 15:47:31 +01:00
Edgar P. Burkhart	16fea07bee	Modified sws input to reflect model	2022-03-03 15:45:59 +01:00
Edgar P. Burkhart	955a370a4c	Added sws->npz conversion	2022-03-03 15:44:39 +01:00
Edgar P. Burkhart	837172b84f	Changed axvline style on x plot	2022-03-03 15:27:50 +01:00
Edgar P. Burkhart	258e3731b6	Fixed bathy +-	2022-03-03 15:26:28 +01:00
Edgar P. Burkhart	77ff8b1e1f	Renamed pos_x x0	2022-03-03 15:25:07 +01:00
Edgar P. Burkhart	301c2a5e47	Fixed x plot	2022-03-03 15:23:53 +01:00
Edgar P. Burkhart	745c4ee181	Added x plot	2022-03-03 15:23:05 +01:00
Edgar P. Burkhart	133edefec2	Added t0 to post	2022-03-03 15:19:30 +01:00
Edgar P. Burkhart	87e108c8dc	Added time scale to plots	2022-03-03 15:15:53 +01:00
Edgar P. Burkhart	b0c316ff37	Updated path to add to user path	2022-03-03 12:59:49 +01:00
Edgar P. Burkhart	ca099834ca	Moved mpi option to correct location	2022-03-03 12:55:41 +01:00
Edgar P. Burkhart	808f2629dc	Fixed path	2022-03-03 12:54:56 +01:00
Edgar P. Burkhart	96d51e4a61	Changed swash to use provided path in conf	2022-03-03 12:53:28 +01:00
Edgar P. Burkhart	0860faf8c3	Fixed typo	2022-03-03 12:35:29 +01:00
Edgar P. Burkhart	11b940d7d0	Moved mpi argument before input	2022-03-03 12:34:09 +01:00
Edgar P. Burkhart	9cadbaccf8	Fixed Popen wait	2022-03-03 12:28:29 +01:00
Edgar P. Burkhart	7542571dfe	Switched to Popen	2022-03-03 12:27:47 +01:00
Edgar P. Burkhart	67fa3a09a5	Added mpi information to logs	2022-03-03 12:18:46 +01:00
Edgar P. Burkhart	eca2636e08	Fixed int to str	2022-03-03 12:04:17 +01:00
Edgar P. Burkhart	5fdcd3a9e2	Fixed typo	2022-03-03 12:03:09 +01:00
Edgar P. Burkhart	fda16fa3ea	Added mpi support for swash	2022-03-03 12:01:34 +01:00
Edgar P. Burkhart	1449b66917	Updated swash run with log file	2022-03-03 11:49:59 +01:00
Edgar P. Burkhart	c456d3d671	Updated post-process description	2022-03-03 11:27:53 +01:00
Edgar P. Burkhart	55d19e710f	Added post-processing config	2022-03-03 11:27:22 +01:00
Edgar P. Burkhart	14ff5eef13	Removed trailing newlines	2022-03-03 11:16:53 +01:00
Edgar P. Burkhart	7061abe284	Post-process output images	2022-03-03 11:16:40 +01:00
Edgar P. Burkhart	420b9cfd4f	Changed output directories	2022-03-03 10:58:49 +01:00
Edgar P. Burkhart	588318e4ce	Processing reflection coefficient with PUV method	2022-03-03 10:54:09 +01:00
Edgar P. Burkhart	e2b495c5a9	Postprocessing free-surface + velocity correctly	2022-03-03 10:38:32 +01:00
Edgar P. Burkhart	0c4bc8a69f	Moved tmpdir for swash run to local storage rather than tmpfs	2022-03-02 16:03:00 +01:00
Edgar P. Burkhart	4ec58f4fa8	Removed PA readswash	2022-03-02 15:53:13 +01:00
Edgar P. Burkhart	4ab8973bec	Postprocessing swash	2022-03-02 15:52:46 +01:00
Edgar P. Burkhart	c4bad56faf	Add /out* to gitignore (swash output)	2022-03-02 15:52:29 +01:00
Edgar P. Burkhart	1522793646	Fixed swash input file	2022-03-02 14:48:13 +01:00
Edgar P. Burkhart	4540b53add	Reorganised processing/read_swash	2022-03-02 14:45:13 +01:00
Edgar P. Burkhart	2092789aa2	PA readswash black reformat	2022-03-02 14:42:09 +01:00
Edgar P. Burkhart	f27f44bbb6	Post-processing black reformat	2022-03-02 14:41:57 +01:00
Edgar P. Burkhart	c4fd6754ab	Added swashrun python	2022-03-02 14:41:27 +01:00
Edgar P. Burkhart	a9570bf333	Added postprocessing script	2022-03-02 14:25:53 +01:00
Edgar P. Burkhart	dca8114bb9	Added creation of output dir	2022-03-02 12:24:23 +01:00
Edgar P. Burkhart	af0ec3cc05	Updated swash input	2022-03-02 12:22:01 +01:00
Edgar P. Burkhart	f816c25865	Pre-processing	2022-03-02 12:21:48 +01:00
Edgar P. Burkhart	0461cb7e08	Added logging	2022-03-02 11:51:53 +01:00
Edgar P. Burkhart	f329690c3d	Added output of bathy and hstru to preprocess	2022-03-02 11:47:57 +01:00
Edgar P. Burkhart	2b6c561104	Processing bathy: added hstru (poro)	2022-03-02 11:24:09 +01:00
Edgar P. Burkhart	86acc6ff5b	Bathymetry processing (combining low-res and high-res)	2022-03-02 11:13:06 +01:00
Edgar P. Burkhart	ca4fb473ea	Swash input	2022-03-02 10:39:19 +01:00
Edgar P. Burkhart	5d61172084	Bathymetry data	2022-03-02 10:37:43 +01:00